STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK15356.1tRNA nucleotidyltransferase (CCA-adding enzyme); PFAM: Nucleotidyltransferase domain; JGI identifier:CP488_01140. (309 aa)    
Predicted Functional Partners:
CEK15359.1
Hypothetical protein; JGI identifier:CP488_01141.
       0.798
CEK15352.1
Hypothetical protein; JGI identifier:CP488_01139.
       0.786
CEK13792.1
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiS family; MoeZ/MoeB domain; Rhodanese-like domain; ThiF family; JGI identifier:CP488_00621.
  
 
 0.776
CEK15362.1
PFAM: Type III restriction enzyme, res subunit; JGI identifier:CP488_01142.
       0.775
CEK15349.1
Flagellar biosynthesis pathway, component FlhB; PFAM: FlhB HrpN YscU SpaS Family; JGI identifier:CP488_01138.
       0.559
CEK15365.1
Hypothetical protein; JGI identifier:CP488_01143.
       0.559
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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