STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK15365.1Hypothetical protein; JGI identifier:CP488_01143. (259 aa)    
Predicted Functional Partners:
CEK15352.1
Hypothetical protein; JGI identifier:CP488_01139.
      
0.559
CEK15356.1
tRNA nucleotidyltransferase (CCA-adding enzyme); PFAM: Nucleotidyltransferase domain; JGI identifier:CP488_01140.
       0.559
CEK15359.1
Hypothetical protein; JGI identifier:CP488_01141.
       0.559
CEK15362.1
PFAM: Type III restriction enzyme, res subunit; JGI identifier:CP488_01142.
       0.559
prfA
Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.430
CEK15349.1
Flagellar biosynthesis pathway, component FlhB; PFAM: FlhB HrpN YscU SpaS Family; JGI identifier:CP488_01138.
       0.417
prmC
(protein release factor)-glutamine N5-methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.411
CEK15373.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; JGI identifier:CP488_01146.
       0.411
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.