STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK15396.1PFAM: Acyltransferase family; JGI identifier:CP488_01154. (169 aa)    
Predicted Functional Partners:
CEK16262.1
PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; JGI identifier:CP488_01449.
  
  
 0.766
CEK12590.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box; JGI identifier:CP488_00103.
  
 
 0.614
CEK13285.1
Histidine kinase with GAF domain; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phospho-acceptor) domain; JGI identifier:CP488_00449.
  
 
 0.594
CEK19153.1
Hypothetical protein; JGI identifier:CP488_02424.
  
  
 0.588
CEK20343.1
PFAM: AAA domain; Chain length determinant protein; TIGRFAM: capsular exopolysaccharide family; JGI identifier:CP488_02825.
  
  
 0.576
CEK19816.1
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain; JGI identifier:CP488_02648.
  
 
 0.564
CEK15394.1
Hypothetical protein; JGI identifier:CP488_01153.
       0.558
CEK15173.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; JGI identifier:CP488_01078.
  
 
 0.557
CEK19190.1
EAL domain-containing protein; PFAM: EAL domain; GGDEF domain; JGI identifier:CP488_02437.
  
  
 0.513
CEK18279.1
Nucleoside-diphosphate-sugar pyrophosphorylase family protein; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Nucleotidyl transferase; Bacterial transferase hexapeptide (six repeats); Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; JGI identifier:CP488_02129.
  
  
 0.508
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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