STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK15886.1PFAM: Helix-turn-helix domain; AraC-type transcriptional regulator N-terminus; JGI identifier:CP488_01320. (295 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.727
CEK15889.1
Hypothetical protein; PFAM: Cupin domain; JGI identifier:CP488_01321.
 
 
 0.640
CEK15896.1
Predicted oxidoreductase, aryl-alcohol dehydrogenase like protein; PFAM: Aldo/keto reductase family; JGI identifier:CP488_01323.
 
     0.501
CEK13415.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; CHASE3 domain; TIGRFAM: PAS domain S-box; JGI identifier:CP488_00491.
  
  
 0.483
CEK15173.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; JGI identifier:CP488_01078.
  
  
 0.480
CEK15883.1
PFAM: AAA domain; JGI identifier:CP488_01319.
  
    0.459
CEK15893.1
Theronine dehydrogenase-like Zn-dependent dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; JGI identifier:CP488_01322.
       0.454
CEK19816.1
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain; JGI identifier:CP488_02648.
  
  
 0.448
CEK13285.1
Histidine kinase with GAF domain; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phospho-acceptor) domain; JGI identifier:CP488_00449.
   
 
 0.447
CEK14178.1
Permease component of ABC-type sugar transporter; PFAM: Binding-protein-dependent transport system inner membrane component; Bacterial extracellular solute-binding protein; JGI identifier:CP488_00751.
     
 0.444
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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