STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK16103.1Arabinogalactan endo-1,4-beta-galactosidase; PFAM: Glycosyl hydrolase family 53; JGI identifier:CP488_01394. (366 aa)    
Predicted Functional Partners:
CEK19414.1
Beta-galactosidase/beta-glucuronidase; PFAM: Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2; Glycosyl hydrolases family 2, sugar binding domain; JGI identifier:CP488_02514; Belongs to the glycosyl hydrolase 2 family.
     0.834
CEK16508.1
Beta-galactosidase/beta-glucuronidase; PFAM: Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2; Glycosyl hydrolases family 2, sugar binding domain; JGI identifier:CP488_01530; Belongs to the glycosyl hydrolase 2 family.
     0.829
CEK17428.1
Endoglucanase; PFAM: Cellulase (glycosyl hydrolase family 5); JGI identifier:CP488_01848; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.705
CEK17715.1
PFAM: Alpha-L-arabinofuranosidase C-terminus; JGI identifier:CP488_01942.
  
    0.705
CEK14791.1
Hypothetical protein; JGI identifier:CP488_00950.
  
    0.704
CEK12878.1
PFAM: Alpha-L-arabinofuranosidase C-terminus; JGI identifier:CP488_00248.
  
    0.703
CEK20037.1
PFAM: Alpha-L-arabinofuranosidase C-terminus; JGI identifier:CP488_02723.
  
    0.700
CEK13546.1
Beta-1,4-xylanase; PFAM: Glycosyl hydrolase family 10; JGI identifier:CP488_00535.
  
     0.695
CEK16106.1
Hypothetical protein; JGI identifier:CP488_01395.
       0.678
CEK16109.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; JGI identifier:CP488_01396.
       0.678
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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