STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK16218.1PFAM: Tetratricopeptide repeat; JGI identifier:CP488_01432. (414 aa)    
Predicted Functional Partners:
CEK12590.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box; JGI identifier:CP488_00103.
  
 
 0.983
CEK19816.1
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain; JGI identifier:CP488_02648.
   
 
 0.983
CEK13415.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; CHASE3 domain; TIGRFAM: PAS domain S-box; JGI identifier:CP488_00491.
 
 
 
 0.943
CEK15173.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; JGI identifier:CP488_01078.
 
 
 
 0.902
CEK13285.1
Histidine kinase with GAF domain; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phospho-acceptor) domain; JGI identifier:CP488_00449.
  
 
 0.872
CEK19833.1
enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; JGI identifier:CP488_02654.
  
 
 0.809
CEK16215.1
Hypothetical protein; PFAM: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; ASPIC and UnbV; JGI identifier:CP488_01431.
  
   0.802
CEK20012.1
Tetratricopeptide repeat protein; PFAM: Glycosyltransferase family 9 (heptosyltransferase); Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_02715.
 
 
 0.795
CEK20563.1
Deacetylase, histone deacetylase/acetoin utilization protein; PFAM: Histone deacetylase domain; JGI identifier:CP488_02897.
   
 0.774
CEK12595.1
Two component transcriptional regulator, LuxR family; PFAM: Bacterial regulatory proteins, luxR family; JGI identifier:CP488_00105.
  
 
 0.764
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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