STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK16249.1Zn-ribbon protein, possibly nucleic acid-binding; PFAM: Putative zinc ribbon domain; JGI identifier:CP488_01444. (238 aa)    
Predicted Functional Partners:
CEK16246.1
Ribonuclease HI; PFAM: Reverse transcriptase-like; JGI identifier:CP488_01443.
  
  
 0.907
CEK18434.1
Hypothetical protein; PFAM: NIF3 (NGG1p interacting factor 3); JGI identifier:CP488_02183; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
  
 0.638
CEK16252.1
Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase; JGI identifier:CP488_01445.
       0.538
CEK16255.1
Hypothetical protein; JGI identifier:CP488_01446.
       0.433
CEK12693.1
PFAM: Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor; JGI identifier:CP488_00154.
  
 
 
 0.432
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.