STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK16657.1PFAM: Bacterial pre-peptidase C-terminal domain; JGI identifier:CP488_01583. (711 aa)    
Predicted Functional Partners:
CEK16651.1
PFAM: Protein of unknown function (DUF1501); JGI identifier:CP488_01581.
 
     0.910
CEK16648.1
PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553); JGI identifier:CP488_01580.
 
     0.880
CEK16654.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C; JGI identifier:CP488_01582.
     0.817
CEK14564.1
PFAM: Protein of unknown function (DUF1501); JGI identifier:CP488_00879.
 
     0.779
CEK14567.1
PFAM: Protein of unknown function (DUF1549); Protein of unknown function (DUF1553); JGI identifier:CP488_00880.
  
     0.775
CEK14991.1
Squalene cyclase; PFAM: Prenyltransferase-like; JGI identifier:CP488_01018.
  
     0.773
CEK14570.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C; JGI identifier:CP488_00881.
 
     0.771
CEK17710.1
Peroxiredoxin; PFAM: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; AhpC/TSA family; JGI identifier:CP488_01940.
  
     0.770
CEK14626.1
Enterochelin esterase-like enzyme; PFAM: Putative esterase; JGI identifier:CP488_00899.
  
     0.745
CEK16586.1
Uncharacterized membrane protein; PFAM: von Willebrand factor type A domain; Protein of unknown function (DUF1355); JGI identifier:CP488_01559.
  
     0.743
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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