STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK17169.1Putative S-layer protein; PFAM: S-layer homology domain; JGI identifier:CP488_01759. (223 aa)    
Predicted Functional Partners:
CEK17172.1
Hypothetical protein; JGI identifier:CP488_01760.
       0.773
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.714
CEK17166.1
PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family; JGI identifier:CP488_01758.
       0.714
CEK17175.1
Hypothetical protein; JGI identifier:CP488_01761.
       0.693
CEK17178.1
PFAM: Shikimate / quinate 5-dehydrogenase; JGI identifier:CP488_01762.
       0.693
CEK17181.1
PFAM: MgtE intracellular N domain; CBS domain; TIGRFAM: Mg2+ transporter (mgtE); JGI identifier:CP488_01763.
       0.649
CEK17158.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; JGI identifier:CP488_01755.
       0.514
CEK17160.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; JGI identifier:CP488_01756.
       0.514
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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