STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK17322.1Predicted protease; PFAM: Pro-kumamolisin, activation domain; JGI identifier:CP488_01813. (729 aa)    
Predicted Functional Partners:
CEK17501.1
Hypothetical protein; PFAM: Putative heavy-metal-binding; JGI identifier:CP488_01872.
  
     0.665
CEK17504.1
Hypothetical protein; PFAM: Putative heavy-metal-binding; JGI identifier:CP488_01873.
  
     0.647
CEK14342.1
PFAM: Legume lectin domain; Fibronectin type III domain; JGI identifier:CP488_00807.
  
     0.614
CEK14791.1
Hypothetical protein; JGI identifier:CP488_00950.
  
     0.529
CEK17325.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; JGI identifier:CP488_01814; Belongs to the sigma-70 factor family. ECF subfamily.
       0.507
CEK16062.1
Hypothetical protein; JGI identifier:CP488_01379.
  
     0.457
CEK19420.1
Phospholipase C; PFAM: Phosphoesterase family; JGI identifier:CP488_02516.
  
     0.457
CEK13925.1
Mn2+/Fe2_transporter, NRAMP family; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters; JGI identifier:CP488_00666.
  
     0.456
CEK19798.1
PFAM: Tetratricopeptide repeat; JGI identifier:CP488_02642.
  
     0.405
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.