STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK17361.1Hypothetical protein; JGI identifier:CP488_01826. (336 aa)    
Predicted Functional Partners:
CEK17358.1
Hypothetical protein; JGI identifier:CP488_01825.
       0.701
CEK12833.1
PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; Cell cycle protein; Helix-hairpin-helix motif; JGI identifier:CP488_00225.
 
     0.689
CEK13220.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family; JGI identifier:CP488_00422.
 
     0.505
CEK17355.1
Sugar phosphate permease; PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter; JGI identifier:CP488_01824.
       0.477
CEK16479.1
Predicted RNA-binding protein of the translin family; PFAM: Translin family; JGI identifier:CP488_01521.
  
     0.426
CEK13777.1
Predicted ATPase; PFAM: HAS barrel domain; Domain of unknown function DUF87; JGI identifier:CP488_00616.
 
     0.416
CEK15023.1
Hypothetical protein; PFAM: Uncharacterized ACR, COG1430; JGI identifier:CP488_01028.
  
     0.414
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.