STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK17561.1PFAM: Helix-hairpin-helix motif; SLBB domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region; comEA protein; JGI identifier:CP488_01892. (235 aa)    
Predicted Functional Partners:
CEK20601.1
PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family; JGI identifier:CP488_02909.
   
  
 0.686
CEK18345.1
PFAM: Competence protein; Domain of unknown function (DUF4131); TIGRFAM: ComEC/Rec2-related protein; JGI identifier:CP488_02152.
  
  
 0.597
CEK17564.1
acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PFAM: Carboxyl transferase domain; JGI identifier:CP488_01893.
       0.549
CEK14715.1
Transcriptional attenuator, LytR family; PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain; JGI identifier:CP488_00928.
 
     0.537
CEK14842.1
PFAM: Type II secretion system (T2SS), protein F; TIGRFAM: type II secretion system protein F; JGI identifier:CP488_00967.
  
  
 0.524
CEK15747.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F; JGI identifier:CP488_01271.
  
  
 0.524
CEK15750.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F; JGI identifier:CP488_01272.
  
  
 0.524
CEK20598.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F; JGI identifier:CP488_02908.
  
  
 0.524
CEK16221.1
PFAM: Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_01433.
  
  
 0.519
CEK20161.1
PFAM: Type IV pilin N-term methylation site GFxxxE; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_02765.
  
  
 0.494
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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