STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK17728.1PFAM: Beta-lactamase superfamily domain; JGI identifier:CP488_01946. (260 aa)    
Predicted Functional Partners:
CEK19653.1
PFAM: Beta-lactamase superfamily domain; JGI identifier:CP488_02593.
  
  
 
0.926
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
 
    
 0.910
recX
Hypothetical protein; Modulates RecA activity; Belongs to the RecX family.
       0.727
CEK17655.1
PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; JGI identifier:CP488_01923; Belongs to the ribF family.
      0.609
CEK17725.1
Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; JGI identifier:CP488_01945.
       0.547
rny
Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.524
CEK17735.1
PFAM: YmdB-like protein; TIGRFAM: metallophosphoesterase, MG_246/BB_0505 family; JGI identifier:CP488_01949.
  
    0.502
CEK17738.1
Hypothetical protein; JGI identifier:CP488_01950.
       0.499
CEK17721.1
DNA translocase FtsK; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; JGI identifier:CP488_01944; Belongs to the FtsK/SpoIIIE/SftA family.
       0.430
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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