STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK17834.1HEAT repeat-containing protein; PFAM: HEAT repeats; JGI identifier:CP488_01981. (515 aa)    
Predicted Functional Partners:
CEK13364.1
Periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like Beta Propeller Repeat; JGI identifier:CP488_00474.
 
 
 0.712
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.598
CEK16074.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_01383.
 
 
   0.587
CEK16654.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; Planctomycete cytochrome C; JGI identifier:CP488_01582.
 
  
 0.565
CEK15242.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_01103.
 
 
   0.557
CEK12955.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; JGI identifier:CP488_00286.
 
  
 0.543
CEK12973.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00295.
 
 
 
 0.535
CEK17825.1
PFAM: TPR repeat; JGI identifier:CP488_01978.
 
   0.530
CEK12492.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00054.
 
 
 
 0.527
CEK17897.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_02001.
 
 
   0.523
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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