Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CEK17900.1Hypothetical protein; JGI identifier:CP488_02002. (180 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase; JGI identifier:CP488_02021.
 
  
  0.935
xylA
PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase, Arthrobacter type; JGI identifier:CP488_00007; Belongs to the xylose isomerase family.
     
  0.900
CEK13261.1
Predicted sugar isomerase; PFAM: Xylose isomerase-like TIM barrel; JGI identifier:CP488_00442.
     
  0.900
CEK17894.1
Hypothetical protein; JGI identifier:CP488_02000.
       0.568
CEK17897.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_02001.
       0.568
CEK17903.1
PFAM: Aldehyde dehydrogenase family; JGI identifier:CP488_02003; Belongs to the aldehyde dehydrogenase family.
 
     0.526
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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