STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK18069.1PFAM: Acetyl xylan esterase (AXE1); JGI identifier:CP488_02057. (319 aa)    
Predicted Functional Partners:
CEK19883.1
Hypothetical protein; PFAM: Trehalose utilisation; JGI identifier:CP488_02672.
  
     0.530
CEK18840.1
PFAM: ADP-ribosylglycohydrolase; JGI identifier:CP488_02320.
  
     0.518
CEK18689.1
PFAM: ADP-ribosylglycohydrolase; JGI identifier:CP488_02270.
  
     0.502
CEK18064.1
PFAM: Fis1 C-terminal tetratricopeptide repeat; JGI identifier:CP488_02056.
       0.499
CEK13897.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase family; JGI identifier:CP488_00656.
 
     0.478
CEK14584.1
Succinate dehydrogenase/fumarate reductase flavoprotein subunit; PFAM: FAD dependent oxidoreductase; JGI identifier:CP488_00885.
 
     0.451
greA-2
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.441
CEK15992.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase family; JGI identifier:CP488_01356.
 
     0.435
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.