STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK18139.1PFAM: Protein of unknown function (DUF4446); JGI identifier:CP488_02081. (164 aa)    
Predicted Functional Partners:
CEK19241.1
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.735
CEK18136.1
RNA polymerase, sigma-24 subunit, RpoE; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; JGI identifier:CP488_02080; Belongs to the sigma-70 factor family. ECF subfamily.
       0.709
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.547
CEK18142.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; JGI identifier:CP488_02082; Belongs to the peptidase S26 family.
       0.541
CEK17063.1
RNA polymerase, sigma 30 subunit, SigH; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-H factor; JGI identifier:CP488_01723.
  
     0.522
CEK17871.1
Uncharacterized protein, possibly involved in motility; PFAM: Flagellar protein (FlbD); JGI identifier:CP488_01993.
  
     0.517
CEK18133.1
PFAM: Putative zinc-finger; JGI identifier:CP488_02079.
       0.496
CEK18145.1
PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase, HisJ family; JGI identifier:CP488_02083; Belongs to the PHP hydrolase family. HisK subfamily.
   
   0.458
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.443
secF
Protein translocase subunit secF/protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
    0.434
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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