STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK18211.1PFAM: Response regulator receiver domain; ANTAR domain; JGI identifier:CP488_02105. (193 aa)    
Predicted Functional Partners:
CEK18209.1
PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; JGI identifier:CP488_02104.
 
   
 0.923
CEK14141.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Periplasmic binding protein; JGI identifier:CP488_00738.
  
 
 0.759
CEK13285.1
Histidine kinase with GAF domain; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phospho-acceptor) domain; JGI identifier:CP488_00449.
  
 0.540
CEK19816.1
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain; JGI identifier:CP488_02648.
 
   
 0.446
CEK16372.1
Ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1; JGI identifier:CP488_01485.
  
    0.415
CEK19342.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phospho-acceptor) domain; PAS domain; JGI identifier:CP488_02490.
 
     0.402
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.