Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CEK18623.1 | CEK18626.1 | CP488_02249 | CP488_02250 | Hypothetical protein; JGI identifier:CP488_02249. | TIGRFAM: prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_02250. | 0.682 |
CEK18623.1 | CEK18629.1 | CP488_02249 | CP488_02251 | Hypothetical protein; JGI identifier:CP488_02249. | TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; JGI identifier:CP488_02251. | 0.560 |
CEK18626.1 | CEK18623.1 | CP488_02250 | CP488_02249 | TIGRFAM: prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_02250. | Hypothetical protein; JGI identifier:CP488_02249. | 0.682 |
CEK18626.1 | CEK18629.1 | CP488_02250 | CP488_02251 | TIGRFAM: prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_02250. | TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; JGI identifier:CP488_02251. | 0.631 |
CEK18629.1 | CEK18623.1 | CP488_02251 | CP488_02249 | TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; JGI identifier:CP488_02251. | Hypothetical protein; JGI identifier:CP488_02249. | 0.560 |
CEK18629.1 | CEK18626.1 | CP488_02251 | CP488_02250 | TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; JGI identifier:CP488_02251. | TIGRFAM: prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_02250. | 0.631 |