STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK18658.1Predicted acyltransferase; PFAM: Acetyltransferase (GNAT) domain; JGI identifier:CP488_02260. (263 aa)    
Predicted Functional Partners:
CEK18661.1
Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) domain; JGI identifier:CP488_02261.
       0.773
CEK18664.1
Predicted polymerase with PALM domain, HD hydrolase domain and Zn ribbon; PFAM: Protein of unknown function (DUF342); JGI identifier:CP488_02262.
       0.533
CEK18666.1
Hypothetical protein; JGI identifier:CP488_02263.
       0.526
CEK18669.1
PFAM: D-ala-D-ala dipeptidase; JGI identifier:CP488_02264.
       0.526
CEK15756.1
PFAM: GxGYxY sequence motif in domain of unknown function; JGI identifier:CP488_01274.
  
    0.454
CEK17415.1
PFAM: GxGYxY sequence motif in domain of unknown function; JGI identifier:CP488_01844.
  
    0.445
CEK18654.1
Subtilisin-like serine protease; PFAM: Carboxypeptidase regulatory-like domain; Subtilase family; JGI identifier:CP488_02259; Belongs to the peptidase S8 family.
  
    0.418
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.