STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK18938.1Predicted oxidoreductase, aryl-alcohol dehydrogenase like protein; PFAM: Aldo/keto reductase family; JGI identifier:CP488_02351. (303 aa)    
Predicted Functional Partners:
CEK18935.1
PFAM: Gluconate 2-dehydrogenase subunit 3; JGI identifier:CP488_02350.
  
    0.727
CEK18941.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase; JGI identifier:CP488_02352.
       0.523
CEK18944.1
Peptidase family protein; PFAM: M42 glutamyl aminopeptidase; JGI identifier:CP488_02353.
       0.518
CEK18924.1
Ribose ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component; JGI identifier:CP488_02347; Belongs to the binding-protein-dependent transport system permease family.
       0.470
CEK18928.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: Periplasmic binding protein domain; JGI identifier:CP488_02348.
       0.470
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.430
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.430
CEK18953.1
Predicted glutamine amidotransferase; PFAM: Peptidase C26; JGI identifier:CP488_02356.
       0.430
CEK18920.1
Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; JGI identifier:CP488_02346.
  
    0.415
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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