Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEK19090.1Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase; JGI identifier:CP488_02402. (250 aa)    
Predicted Functional Partners:
CEK20343.1
PFAM: AAA domain; Chain length determinant protein; TIGRFAM: capsular exopolysaccharide family; JGI identifier:CP488_02825.
 
  
 0.952
CEK17213.1
PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; JGI identifier:CP488_01775; Belongs to the glycosyltransferase 26 family.
    
 0.916
CEK19127.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; Glycosyl transferase 4-like domain; JGI identifier:CP488_02415.
 
    0.878
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.701
CEK20346.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; JGI identifier:CP488_02826.
 
  
 0.691
CEK14904.1
Hypothetical protein; JGI identifier:CP488_00988.
  
  
 0.641
CEK16262.1
PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; JGI identifier:CP488_01449.
 
  
0.625
CEK20570.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; JGI identifier:CP488_02899.
  
  
 0.598
CEK19153.1
Hypothetical protein; JGI identifier:CP488_02424.
  
  
 0.545
CEK20012.1
Tetratricopeptide repeat protein; PFAM: Glycosyltransferase family 9 (heptosyltransferase); Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_02715.
  
  
 0.533
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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