STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK19100.1Dienelactone hydrolase-like enzyme; PFAM: Dienelactone hydrolase family; JGI identifier:CP488_02406. (285 aa)    
Predicted Functional Partners:
CEK19103.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin-like peptidase domain; PDZ domain; JGI identifier:CP488_02407.
       0.762
CEK19106.1
PFAM: Putative zinc-finger; JGI identifier:CP488_02408.
       0.671
CEK19109.1
PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; JGI identifier:CP488_02409; Belongs to the sigma-70 factor family. ECF subfamily.
       0.615
CEK13456.1
Peptidase S16, lon domain protein; PFAM: ATP-dependent protease La (LON) domain; JGI identifier:CP488_00505.
  
    0.459
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.