STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK19591.1Ankyrin repeat-containing protein; PFAM: Ankyrin repeats (3 copies); JGI identifier:CP488_02572. (117 aa)    
Predicted Functional Partners:
CEK13364.1
Periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like Beta Propeller Repeat; JGI identifier:CP488_00474.
   
 0.902
CEK13068.1
PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; JGI identifier:CP488_00344.
    
 0.778
CEK20201.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeats (3 copies); JGI identifier:CP488_02778.
  
     0.763
CEK16443.1
Ankyrin repeat-containing protein; PFAM: Ankyrin repeat; Ankyrin repeats (3 copies); JGI identifier:CP488_01508.
  
     0.747
CEK12858.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00238.
   
 0.726
CEK17825.1
PFAM: TPR repeat; JGI identifier:CP488_01978.
   
 0.726
CEK18941.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase; JGI identifier:CP488_02352.
  
 
 0.630
rpsC
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.556
CEK19594.1
Hypothetical protein; JGI identifier:CP488_02573.
       0.494
CEK12973.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00295.
 
  0.489
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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