STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK19688.1PFAM: ATPase family associated with various cellular activities (AAA); JGI identifier:CP488_02605. (345 aa)    
Predicted Functional Partners:
CEK19682.1
PFAM: Domain of unknown function (DUF4129); JGI identifier:CP488_02603.
  
    0.784
CEK19685.1
PFAM: Domain of unknown function (DUF4350); JGI identifier:CP488_02604.
       0.781
CEK19679.1
Hypothetical protein; JGI identifier:CP488_02602.
       0.773
CEK19691.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; Glycosyl transferase 4-like domain; JGI identifier:CP488_02606.
       0.752
CEK13336.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF4129); JGI identifier:CP488_00465.
 
   
 0.683
CEK13339.1
PFAM: Protein of unknown function DUF58; JGI identifier:CP488_00466.
 
  
 0.663
CEK19750.1
PFAM: Protein of unknown function DUF58; JGI identifier:CP488_02626.
  
 0.598
dacA
TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.493
CEK19676.1
Hypothetical protein; JGI identifier:CP488_02601.
       0.493
CEK19694.1
Uncharacterized protein involved in formation of curli polymers; PFAM: Curli production assembly/transport component CsgG; JGI identifier:CP488_02607.
       0.480
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.