STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK19804.1PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_02644. (428 aa)    
Predicted Functional Partners:
CEK12973.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00295.
 
   0.815
CEK12492.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00054.
 
   0.813
CEK13943.1
PFAM: Tetratricopeptide repeat; JGI identifier:CP488_00672.
 
 
 0.811
CEK14083.1
PFAM: TPR repeat; Tetratricopeptide repeat; JGI identifier:CP488_00719.
 
 
 0.807
CEK16074.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_01383.
 
   0.797
CEK12858.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00238.
 
 
  0.792
CEK17897.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_02001.
 
   
 0.787
CEK15242.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_01103.
 
    0.781
CEK17825.1
PFAM: TPR repeat; JGI identifier:CP488_01978.
 
 
  0.781
CEK13224.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00424.
  
     0.763
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.