STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK20266.1PFAM: Domain of unknown function (DUF4380); JGI identifier:CP488_02800. (308 aa)    
Predicted Functional Partners:
CEK20263.1
Competence/damage-inducible protein cinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain; JGI identifier:CP488_02799.
       0.746
CEK17125.1
Hypothetical protein; JGI identifier:CP488_01744.
  
     0.597
CEK18043.1
PFAM: Beta-galactosidase; JGI identifier:CP488_02049.
  
     0.581
CEK19462.1
Hypothetical protein; JGI identifier:CP488_02530.
  
     0.559
CEK14089.1
Hypothetical protein; JGI identifier:CP488_00721.
  
     0.554
CEK20269.1
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.527
CEK16739.1
Hypothetical protein; JGI identifier:CP488_01610.
  
     0.510
CEK15992.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase family; JGI identifier:CP488_01356.
  
     0.499
CEK18635.1
Hypothetical protein; JGI identifier:CP488_02253.
  
     0.491
CEK12847.1
Hypothetical protein; JGI identifier:CP488_00233.
  
     0.482
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.