STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK20324.1NADH dehydrogenase, FAD-containing subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; JGI identifier:CP488_02819. (456 aa)    
Predicted Functional Partners:
CEK20321.1
PFAM: Cytochrome oxidase assembly protein; JGI identifier:CP488_02818.
 
  
 0.734
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.716
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
  
 0.699
CEK20334.1
Predicted dehydrogenase; PFAM: FAD dependent oxidoreductase; JGI identifier:CP488_02822.
     
 0.550
CEK18856.1
PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; JGI identifier:CP488_02325.
  
  
 0.496
CEK20327.1
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily; JGI identifier:CP488_02820.
     
 0.477
CEK20331.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1802); JGI identifier:CP488_02821.
       0.455
CEK20337.1
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; JGI identifier:CP488_02823; Belongs to the ABC transporter superfamily.
       0.455
CEK14738.1
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.442
CEK18649.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein; PFAM: Bacterial Cytochrome Ubiquinol Oxidase; JGI identifier:CP488_02257; Belongs to the cytochrome ubiquinol oxidase subunit 1 family.
 
   
 0.442
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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