STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK20391.1PFAM: F5/8 type C domain; JGI identifier:CP488_02841. (686 aa)    
Predicted Functional Partners:
CEK16262.1
PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; JGI identifier:CP488_01449.
  
  
 0.545
CEK20346.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; JGI identifier:CP488_02826.
  
  
 0.493
CEK20570.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; JGI identifier:CP488_02899.
  
  
 0.493
CEK20343.1
PFAM: AAA domain; Chain length determinant protein; TIGRFAM: capsular exopolysaccharide family; JGI identifier:CP488_02825.
  
  
 0.456
CEK20385.1
Cystathionine beta-lyase/cystathionine gamma-synthase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: cystathionine beta-lyase, bacterial; JGI identifier:CP488_02839.
       0.443
CEK20388.1
Hypothetical protein; JGI identifier:CP488_02840.
       0.443
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.