STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK20567.1Parvulin-like peptidyl-prolyl isomerase; PFAM: PPIC-type PPIASE domain; JGI identifier:CP488_02898. (377 aa)    
Predicted Functional Partners:
CEK20563.1
Deacetylase, histone deacetylase/acetoin utilization protein; PFAM: Histone deacetylase domain; JGI identifier:CP488_02897.
   
   0.696
CEK20570.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain; JGI identifier:CP488_02899.
     
 0.680
CEK13264.1
Periplasmic component of the Tol biopolymer transport system; PFAM: WD40-like Beta Propeller Repeat; JGI identifier:CP488_00443.
  
 
 0.502
secF
Protein translocase subunit secF/protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.466
CEK20560.1
PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; JGI identifier:CP488_02896.
  
  
 0.445
CEK13123.1
Polyferredoxin; PFAM: 4Fe-4S dicluster domain; 4Fe-4S binding domain; JGI identifier:CP488_00372.
  
  
 0.426
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.