STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64040.1PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (259 aa)    
Predicted Functional Partners:
CDM65162.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
  
 0.804
CDM66522.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
    
  0.517
CDM64599.1
PFAM: Bacterial regulatory proteins, gntR family; UTRA domain; TIGRFAM: phosphonates metabolism transcriptional regulator PhnF.
  
   
0.467
CDM64039.1
Endopolygalacturonase; PFAM: Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
       0.442
CDM64294.1
Cupin domain-containing protein; PFAM: Cupin domain.
 
  
 0.438
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.436
CDM64036.1
Protocatechuate 3,4-dioxygenase beta subunit; PFAM: Carboxypeptidase regulatory-like domain.
 
    0.418
CDM64187.1
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
  
0.416
CDM64321.1
Sugar phosphate permease; PFAM: Major Facilitator Superfamily.
 
   
 0.414
CDM64079.1
Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.410
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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