STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64067.1PFAM: Tetratricopeptide repeat; TPR repeat. (427 aa)    
Predicted Functional Partners:
CDM66953.1
PFAM: TPR repeat; Tetratricopeptide repeat.
 
 0.851
CDM64739.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
  0.840
CDM64528.1
DNA-binding protein with winged-HTH domain; PFAM: Transcriptional regulatory protein, C terminal; TPR repeat.
 
 
  0.807
CDM65813.1
PFAM: Tetratricopeptide repeat; TPR repeat.
  
 
  0.793
CDM65449.1
DNA-binding protein with winged-HTH domain; PFAM: Transcriptional regulatory protein, C terminal; TPR repeat.
 
 
  0.787
carA
PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.
       0.773
CDM64835.1
Tfp pilus assembly protein PilF; PFAM: TPR repeat; Tetratricopeptide repeat.
 
    0.765
CDM64890.1
PFAM: Tetratricopeptide repeat.
  
     0.755
CDM65265.1
DNA-binding protein with winged-HTH domain; PFAM: Transcriptional regulatory protein, C terminal; Tetratricopeptide repeat; TPR repeat.
 
 
  0.749
CDM65457.1
PFAM: Tetratricopeptide repeat; TPR repeat.
  
     0.744
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.