STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64092.1PFAM: Bacterial protein of unknown function (DUF885). (635 aa)    
Predicted Functional Partners:
CDM64749.1
PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region.
 
    0.935
CDM64093.1
Hypothetical protein.
 
     0.828
CDM64750.1
Hypothetical protein.
  
     0.625
CDM64090.1
Hypothetical protein; PFAM: Putative glycosyl hydrolase of unknown function (DUF1680).
 
     0.516
CDM64747.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
  
     0.514
CDM64094.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; PAS domain; TIGRFAM: PAS domain S-box.
       0.497
CDM64095.1
PFAM: Response regulator receiver domain; HDOD domain; TIGRFAM: uncharacterized domain HDIG.
       0.497
CDM64096.1
PFAM: HD domain; Response regulator receiver domain.
       0.479
CDM64091.1
Outer membrane receptor for ferrienterochelin and colicins; PFAM: Carboxypeptidase regulatory-like domain.
       0.432
CDM64195.1
Predicted unsaturated glucuronyl hydrolase; PFAM: Glycosyl Hydrolase Family 88.
  
     0.401
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.