STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64126.1Coenzyme F390 synthetase; PFAM: AMP-binding enzyme. (459 aa)    
Predicted Functional Partners:
CDM65237.1
Hypothetical protein; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit.
 
 
 0.811
CDM65233.1
Hypothetical protein; PFAM: Phenylacetic acid catabolic protein.
 
 
 0.793
CDM64127.1
4-aminobutyrate aminotransferase family protein; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.773
CDM64128.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase.
       0.773
CDM65198.1
Coenzyme F390 synthetase; PFAM: AMP-binding enzyme.
  
     0.773
CDM64124.1
Predicted PLP-dependent enzyme possibly involved in cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
       0.743
CDM64125.1
Fe-S oxidoreductase; PFAM: Radical SAM superfamily.
       0.741
CDM65172.1
Capsular exopolysaccharide biosynthesis protein; PFAM: AAA domain; Chain length determinant protein; G-rich domain on putative tyrosine kinase; TIGRFAM: capsular exopolysaccharide family.
    
  0.679
CDM66068.1
Capsular exopolysaccharide biosynthesis protein; PFAM: AAA domain; Chain length determinant protein; G-rich domain on putative tyrosine kinase; TIGRFAM: capsular exopolysaccharide family.
    
  0.679
CDM65088.1
Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2.
    
  0.675
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.