STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64236.1PFAM: Helix-hairpin-helix motif; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region. (138 aa)    
Predicted Functional Partners:
CDM65375.1
PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
   
  
 0.706
CDM65591.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F.
  
  
 0.640
CDM66481.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F.
  
  
 0.640
CDM65543.1
PFAM: Competence protein; Domain of unknown function (DUF4131); Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.581
CDM65588.1
Type IV-A pilus assembly ATPase PilB; PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein; TIGRFAM: type IV-A pilus assembly ATPase PilB.
  
  
 0.495
CDM66480.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein.
  
  
 0.495
CDM64811.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
  
 0.427
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.