STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64497.1Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain. (205 aa)    
Predicted Functional Partners:
CDM64498.1
L-aminopeptidase DmpA; PFAM: Peptidase family S58.
       0.773
CDM64499.1
PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: tRNA threonylcarbamoyl adenosine modification protein YjeE.
       0.773
CDM64496.1
PFAM: Protein of unknown function DUF72.
       0.723
CDM65184.1
PFAM: Glycosyl transferase family 2.
  
 
 0.652
CDM65185.1
PFAM: Glycosyl transferase family 2.
  
 
 0.652
CDM66262.1
PFAM: Glycosyl transferase family 2.
  
 
 0.652
CDM64500.1
Aminodeoxychorismate synthase, component I; PFAM: Aminotransferase class IV; chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade.
 
  
  0.640
CDM65090.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
 
 
  0.593
CDM66261.1
PFAM: Glycosyl transferase family 2.
    
 0.572
CDM66266.1
PFAM: Glycosyl transferase family 2.
    
 0.572
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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