STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64510.1PFAM: Domain of unknown function (DUF1083). (212 aa)    
Predicted Functional Partners:
CDM64395.1
Predicted Fe-S oxidoreductase; PFAM: Radical SAM superfamily; 4Fe-4S single cluster domain.
  
     0.753
CDM66628.1
Predicted Fe-S oxidoreductase; PFAM: Radical SAM superfamily; 4Fe-4S single cluster domain.
  
     0.749
CDM64867.1
PFAM: TonB-dependent Receptor Plug Domain; Carboxypeptidase regulatory-like domain.
  
     0.732
CDM66990.1
Hypothetical protein.
  
     0.726
CDM64509.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like; PFAM: Enoyl-(Acyl carrier protein) reductase.
       0.723
CDM66502.1
TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain.
  
     0.677
CDM66688.1
PFAM: Matrixin.
  
     0.639
CDM66734.1
TonB family protein; PFAM: Gram-negative bacterial TonB protein C-terminal; TIGRFAM: TonB family C-terminal domain.
  
     0.635
CDM64556.1
Predicted metal-dependent hydrolase; PFAM: SprT-like family.
  
     0.611
CDM64757.1
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB-dependent Receptor Plug Domain; Carboxypeptidase regulatory-like domain.
  
     0.606
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.