STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64679.1PFAM: AhpC/TSA family. (225 aa)    
Predicted Functional Partners:
CDM66513.1
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.867
CDM64678.1
PFAM: AhpC/TSA family; Cytochrome C biogenesis protein transmembrane region.
  
  
 0.826
msrA
methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.810
CDM64231.1
Aminopeptidase N; PFAM: Tetratricopeptide repeat.
  
     0.758
CDM65460.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: PKD domain.
  
 
   0.754
CDM67059.1
Cytochrome c biogenesis factor; PFAM: Aspartyl protease; Tetratricopeptide repeat.
  
     0.736
CDM66601.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-antigen ligase like membrane protein; PDZ domain.
  
    0.735
CDM67115.1
PFAM: Carboxypeptidase regulatory-like domain.
  
     0.733
CDM65770.1
Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
 
   0.724
CDM66624.1
PFAM: Organic solvent tolerance protein; OstA-like protein.
  
   
 0.723
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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