STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64761.1PFAM: TPR repeat; Tetratricopeptide repeat. (535 aa)    
Predicted Functional Partners:
CDM65813.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
 0.850
CDM64935.1
PFAM: Tetratricopeptide repeat.
 
 0.797
CDM64760.1
Transcriptional regulator, DeoR family; PFAM: DeoR-like helix-turn-helix domain; DeoR C terminal sensor domain.
       0.773
CDM65561.1
PFAM: Tetratricopeptide repeat.
 
 0.757
CDM67116.1
PFAM: TPR repeat; Tetratricopeptide repeat.
 
     0.694
CDM64890.1
PFAM: Tetratricopeptide repeat.
 
     0.683
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.674
CDM66899.1
PFAM: Tetratricopeptide repeat; zinc-ribbon domain.
  
 
   0.657
CDM64384.1
PFAM: Tetratricopeptide repeat; TPR repeat.
  
     0.650
CDM65019.1
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phospho-acceptor) domain; PAS domain; TIGRFAM: PAS domain S-box.
 
 
 0.647
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.