STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64793.1PFAM: Fibronectin type III domain. (352 aa)    
Predicted Functional Partners:
hslU
ATP-dependent protease HslVU, ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
       0.797
hslV
ATP dependent peptidase CodWX, CodW component; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
       0.782
CDM64904.1
RHS repeat-associated core domain; PFAM: D-alanyl-D-alanine carboxypeptidase; TIGRFAM: RHS repeat-associated core domain.
 
 
  0.703
CDM65424.1
PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies).
  
 
  0.698
CDM64364.1
PFAM: Outer membrane efflux protein.
  
     0.665
CDM64679.1
PFAM: AhpC/TSA family.
  
 
   0.663
CDM67185.1
TIGRFAM: RHS repeat-associated core domain.
  
 
  0.663
CDM67123.1
PDK repeat-containing protein; PFAM: PKD domain.
 
  
 0.660
CDM65371.1
PFAM: Outer membrane efflux protein.
  
     0.638
CDM66601.1
Lipid A core-O-antigen ligase-like enyme; PFAM: O-antigen ligase like membrane protein; PDZ domain.
  
     0.638
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.