STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM64868.1N-acyl-D-aspartate/D-glutamate deacylase; PFAM: Amidohydrolase; D-aminoacylase, C-terminal region; Amidohydrolase family. (548 aa)    
Predicted Functional Partners:
CDM66825.1
PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family.
 
     0.739
CDM64867.1
PFAM: TonB-dependent Receptor Plug Domain; Carboxypeptidase regulatory-like domain.
       0.558
CDM64869.1
PFAM: Carboxypeptidase regulatory-like domain.
       0.548
CDM65023.1
PFAM: Beta-lactamase enzyme family.
 
     0.469
CDM66814.1
PFAM: Beta-lactamase enzyme family.
 
     0.452
CDM64596.1
N-acetyl-beta-hexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2.
    
  0.442
CDM66310.1
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain.
 
    0.426
CDM64314.1
Predicted TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase family.
 
     0.419
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.