STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65003.1Parvulin-like peptidyl-prolyl isomerase; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain. (367 aa)    
Predicted Functional Partners:
CDM65004.1
ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter.
 
     0.662
CDM64202.1
Parvulin-like peptidyl-prolyl isomerase; PFAM: PPIC-type PPIASE domain.
  
     0.629
rpmB
LSU ribosomal protein L28P; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.537
CDM66624.1
PFAM: Organic solvent tolerance protein; OstA-like protein.
  
     0.504
CDM66343.1
Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
     0.487
CDM65769.1
PFAM: SurA N-terminal domain.
  
     0.465
CDM65285.1
Anti-sigma regulatory factor (Ser/Thr protein kinase); PFAM: Histidine kinase-like ATPase domain.
  
     0.456
CDM66232.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OmpA family.
  
     0.422
CDM66016.1
Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain; Tetratricopeptide repeat.
  
     0.415
CDM66559.1
Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain; LysM domain.
  
     0.414
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.