STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65040.1Predicted TIM-barrel fold metal-dependent hydrolase, COG3618; PFAM: Amidohydrolase. (278 aa)    
Predicted Functional Partners:
CDM65041.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like; PFAM: Enoyl-(Acyl carrier protein) reductase.
 
 
  0.935
CDM65035.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like; PFAM: short chain dehydrogenase.
 
 
  0.818
CDM65036.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetate (FAA) hydrolase family.
 
     0.792
CDM65034.1
PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; SAF domain.
 
     0.756
CDM65039.1
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.733
CDM65038.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter.
       0.691
CDM65919.1
Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Zinc-binding dehydrogenase.
  
 
  0.684
CDM66591.1
Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
  
 
  0.684
CDM66926.1
NADPH-dependent glutamate synthase beta chain-like oxidoreductase; PFAM: Oxidoreductase NAD-binding domain.
    
  0.658
CDM65037.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: Periplasmic binding protein domain.
       0.627
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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