STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65132.1Beta-1,4-xylanase; PFAM: Glycosyl hydrolase family 10. (411 aa)    
Predicted Functional Partners:
CDM65127.1
Alpha-glucuronidase; PFAM: Glycosyl hydrolase family 67 C-terminus; Glycosyl hydrolase family 67 middle domain; Glycosyl hydrolase family 67 N-terminus; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.856
CDM65131.1
Glycoside/pentoside/hexuronide transporter; PFAM: MFS/sugar transport protein; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter.
 
     0.830
CDM64033.1
Beta-xylosidase; PFAM: Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
 0.811
CDM64167.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase family.
  
  
  0.798
CDM64170.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase family.
  
  
  0.781
CDM66036.1
Beta-xylosidase; PFAM: Glycosyl hydrolases family 43.
 
  
 0.750
CDM65133.1
PFAM: Glycosyl hydrolase family 3 C-terminal domain; Glycosyl hydrolase family 3 N terminal domain; PA14 domain; Fibronectin type III-like domain.
 
  
  0.745
CDM64038.1
PFAM: Pectic acid lyase; TIGRFAM: pectate lyase, PelA/Pel-15E family.
  
  
  0.722
CDM65130.1
PFAM: Glycosyl hydrolase family 3 C-terminal domain; Glycosyl hydrolase family 3 N terminal domain; Fibronectin type III-like domain; Belongs to the glycosyl hydrolase 3 family.
    
  0.711
CDM64037.1
PFAM: Pectinesterase.
  
     0.703
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.