STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65182.1Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase. (332 aa)    
Predicted Functional Partners:
CDM65183.1
Asparagine synthase, glutamine-hydrolyzing; PFAM: Glutamine amidotransferase domain; Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing).
       0.773
CDM65180.1
CMP-N-acetylneuraminic acid synthetase; PFAM: Cytidylyltransferase.
 
     0.700
CDM65179.1
PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing.
 
     0.611
CDM65178.1
N-acetylneuraminate synthase; PFAM: SAF domain; NeuB family.
 
     0.599
CDM65184.1
PFAM: Glycosyl transferase family 2.
  
 
  0.583
CDM65181.1
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase; PFAM: Methyltransferase domain.
 
     0.544
CDM66261.1
PFAM: Glycosyl transferase family 2.
  
 
 0.496
CDM66266.1
PFAM: Glycosyl transferase family 2.
  
 
 0.496
CDM65185.1
PFAM: Glycosyl transferase family 2.
  
 
  0.428
CDM65199.1
PFAM: Glycosyl transferase family 2.
  
 
  0.419
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.