STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65218.1Predicted xylanase/chitin deacetylase; PFAM: Polysaccharide deacetylase. (261 aa)    
Predicted Functional Partners:
CDM65217.1
PFAM: Glycosyl transferase family 2.
       0.705
CDM65220.1
PFAM: Glycosyl transferase family 2.
  
 
  0.681
CDM65219.1
PFAM: Putative zinc binding domain; Methyltransferase domain; C-methyltransferase C-terminal domain.
       0.675
CDM65215.1
PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase.
       0.624
CDM65216.1
Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.624
CDM65221.1
Hypothetical protein.
       0.585
CDM65214.1
Hypothetical protein.
       0.578
CDM64150.1
PFAM: Glycosyl hydrolases family 18; Polysaccharide deacetylase; Glycosyltransferase like family 2.
 
 
0.520
CDM65222.1
Hypothetical protein; PFAM: Domain of unknown function (DUF2172).
       0.504
CDM66261.1
PFAM: Glycosyl transferase family 2.
  
 
 0.496
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.