STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65237.1Hypothetical protein; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit. (259 aa)    
Predicted Functional Partners:
CDM65233.1
Hypothetical protein; PFAM: Phenylacetic acid catabolic protein.
 
  
 
0.970
CDM65234.1
Predicted metal-sulfur cluster biosynthetic enzyme; PFAM: Domain of unknown function DUF59.
 
 
 0.890
CDM64126.1
Coenzyme F390 synthetase; PFAM: AMP-binding enzyme.
 
 
 0.811
CDM65236.1
Hypothetical protein.
       0.773
CDM65235.1
PFAM: Phenylacetic acid degradation B.
       0.732
kynA
Tryptophan 2,3-dioxygenase (vermilion); Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
     0.552
CDM66522.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
  
 0.546
CDM65198.1
Coenzyme F390 synthetase; PFAM: AMP-binding enzyme.
 
 
 0.533
CDM66429.1
PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain.
  
 
 0.474
CDM66220.1
Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
  0.473
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.