STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65265.1DNA-binding protein with winged-HTH domain; PFAM: Transcriptional regulatory protein, C terminal; Tetratricopeptide repeat; TPR repeat. (636 aa)    
Predicted Functional Partners:
CDM65813.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
 
 0.766
CDM64067.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
 
  0.749
CDM64682.1
PFAM: Protein kinase domain; TPR repeat.
 
 
0.747
CDM64739.1
PFAM: Tetratricopeptide repeat; TPR repeat.
 
 
  0.734
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.734
CDM65561.1
PFAM: Tetratricopeptide repeat.
 
 
  0.724
CDM66633.1
Tfp pilus assembly protein PilF; PFAM: Peptidase MA superfamily; Tetratricopeptide repeat; TPR repeat.
 
 
  0.723
CDM65457.1
PFAM: Tetratricopeptide repeat; TPR repeat.
  
 
 0.719
CDM65271.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin-like peptidase domain.
    
  0.716
CDM65270.1
PFAM: Protein kinase domain.
     0.714
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.