STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65401.1PFAM: Domain of unknown function (DUF3387). (471 aa)    
Predicted Functional Partners:
CDM65400.1
Hypothetical protein.
     0.994
CDM65394.1
Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase.
 
 
 0.956
CDM66716.1
Type I restriction-modification system methyltransferase subunit; PFAM: HsdM N-terminal domain.
 
 0.945
CDM64702.1
PFAM: Type I restriction modification DNA specificity domain.
  
  
 0.775
CDM64701.1
Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase; Type I restriction enzyme R protein N terminus (HSDR_N).
 
 
 0.768
CDM64055.1
PFAM: Domain of unknown function (DUF4338).
  
 
 0.722
CDM65399.1
T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
       0.545
CDM65395.1
Hypothetical protein.
       0.531
CDM65396.1
Hypothetical protein.
       0.528
CDM65397.1
Hypothetical protein.
       0.528
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.