STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDM65461.1PFAM: BNR/Asp-box repeat; Putative peptidoglycan binding domain; Photosynthesis system II assembly factor YCF48. (766 aa)    
Predicted Functional Partners:
CDM65460.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: PKD domain.
 
     0.824
CDM66695.1
Hypothetical protein.
  
     0.700
CDM66624.1
PFAM: Organic solvent tolerance protein; OstA-like protein.
  
     0.626
CDM67115.1
PFAM: Carboxypeptidase regulatory-like domain.
  
     0.622
CDM66343.1
Beta-barrel assembly machine subunit BamA; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
     0.608
CDM64679.1
PFAM: AhpC/TSA family.
  
     0.603
CDM64231.1
Aminopeptidase N; PFAM: Tetratricopeptide repeat.
  
     0.599
CDM65800.1
Mg-chelatase subunit ChlD; PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.598
CDM65801.1
PFAM: von Willebrand factor type A domain; TIGRFAM: VWFA-related Acidobacterial domain.
  
     0.583
CDM66338.1
Aminopeptidase N; PFAM: Peptidase MA superfamily; Tetratricopeptide repeat; TPR repeat.
 
     0.574
Your Current Organism:
Pyrinomonas methylaliphatogenes
NCBI taxonomy Id: 454194
Other names: Acidobacteriaceae bacterium K22, DSM 25857, ICMP 18710, P. methylaliphatogenes, Pyrinomonas methylaliphatogenes Crowe et al. 2014, strain K22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.